ggevonet

Source: R/ggevonet.R

drawing phylogenetic tree from phylo object

ggevonet(tr, mapping = NULL, layout = "slanted", mrsd = NULL,
  as.Date = FALSE, yscale = "none", yscale_mapping = NULL,
  ladderize = FALSE, right = FALSE, branch.length = "branch.length",
  ndigits = NULL, min_crossing = TRUE, ...)

Arguments

tr

a evonet object
mapping

aes mapping
layout

one of 'rectangular', 'slanted'
mrsd

most recent sampling date
as.Date

logical whether using Date class in time tree
yscale

y scale
yscale_mapping

yscale mapping for category variable
ladderize

logical
right

logical
branch.length

variable for scaling branch, if 'none' draw cladogram
ndigits

number of digits to round numerical annotation variable
min_crossing

logical, rotate clades to minimize crossings
...

additional parameter

Value

tree

See also

evonet, ggtree

Author

Klaus Schliep

Examples

(enet <- ape::read.evonet(text='((a:2,(b:1)#H1:1):1,(#H1,c:1):2);'))

#> 
#>     Evolutionary network with 1 reticulation
#> 
#>                --- Base tree ---
#> Phylogenetic tree with 3 tips and 4 internal nodes.
#> 
#> Tip labels:
#>   a, b, c
#> Node labels:
#>   , , #H1, 
#> 
#> Rooted; includes branch lengths.
ggevonet(enet) + geom_tiplab()