Utility function to plot.phylo — cladePar • phangorn

cladePar can help you coloring (choosing edge width/type) of clades.

Usage

cladePar(tree, node, edge.color = "red", tip.color = edge.color,
  edge.width = 1, edge.lty = "solid", x = NULL, plot = FALSE, ...)

Arguments

tree: an object of class phylo.
node: the node which is the common ancestor of the clade.
edge.color: see plot.phylo.
tip.color: see plot.phylo.
edge.width: see plot.phylo.
edge.lty: see plot.phylo.
x: the result of a previous call to cladeInfo.
plot: logical, if TRUE the tree is plotted.
...: Further arguments passed to or from other methods.

Value

A list containing the information about the edges and tips.

See also

Author

Klaus Schliep klaus.schliep@gmail.com

Examples


tree <- rtree(10)
plot(tree)
nodelabels()

x <- cladePar(tree, 12)
cladePar(tree, 18, "blue", "blue", x=x, plot=TRUE)