This function plots an image of an alignment of sequences.
Usage
# S3 method for class 'phyDat'
image(x, ...)
# S3 method for class 'ancestral'
image(x, ...)
Arguments
- x
an object containing sequences, an object of class phyDat.
- ...
further arguments passed to or from other methods.
Value
image.phyDat returns silently x.
Details
A wrapper for using image.DNAbin and
image.AAbin.
Codons triplets are transformed and handled as nucleotide sequences. So far
it is not yet possible to plot data with type="USER".
Examples
data("chloroplast")
image(chloroplast[, 1:50], scheme="Clustal", show.aa = TRUE)
