ggsplitnet

Source: R/ggsplitnet.R

drawing phylogenetic tree from phylo object

ggsplitnet(tr, mapping = NULL, layout = "slanted", mrsd = NULL,
  as.Date = FALSE, yscale = "none", yscale_mapping = NULL,
  ladderize = FALSE, right = FALSE, branch.length = "branch.length",
  ndigits = NULL, ...)

Arguments

tr

a networx object
mapping

aes mapping
layout

so far only 'slanted' is supported.
mrsd

most recent sampling date
as.Date

logical whether using Date class in time tree
yscale

y scale
yscale_mapping

yscale mapping for category variable
ladderize

logical
right

logical
branch.length

variable for scaling branch, if 'none' draw cladogram
ndigits

number of digits to round numerical annotation variable
...

additional parameter

Value

tree

References

Schliep, K., Potts, A. J., Morrison, D. A. and Grimm, G. W. (2017), Intertwining phylogenetic trees and networks. Methods Ecol Evol. 8, 1212--1220. doi:10.1111/2041-210X.12760

See also

ggtree, networx, consensusNet, neighborNet

Author

Klaus Schliep

Examples

data(yeast, package='phangorn')
dm <- phangorn::dist.ml(yeast)
nnet <- phangorn::neighborNet(dm)
ggsplitnet(nnet) + geom_tiplab2()